PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g020610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 272aa    MW: 30456.1 Da    PI: 5.0351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g020610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-111972371055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR++iN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sopen10g020610.1 197 RKRREKINQRLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 237
                       9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-14186253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12191246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-11196241No hitNo description
PfamPF000104.5E-8197237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEPVFEDEWS GMCSTDQEAD FMAQLLWQPN NIDNMYFSSY NGCSSSQFSF PSHESYYQSH  60
VQSILTRNGS SITKENGMVE GENTSSPSQV LATYNPIEVD DFLNQDVSME SGENTAKLLD  120
SPPESSKKKR LCNLLGDVPK NKRSVNLKKA SEMDGKNKAA LQRQNSISCC SEDESINVPK  180
SRASRGSATD SQSLYARKRR EKINQRLRIL QSLVPNGTKV DISTMLEEAV QYVKFLQLQI  240
KLLSSDDLWM YAPIAYNGMD IGLDLKIGTP KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055483.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLK4D0D50.0K4D0D5_SOLLC; Uncharacterized protein
STRINGSolyc10g049780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-55bHLH family protein